Complete bibliography
Publications
Research papers and reviews, with references, code, and contributions.
* Equal contribution. Author lists are abbreviated; complete authors are provided in BibTeX.
2026
CellCo-first author
Tao Zhang*, Xiufeng Li*, Wei Zhou, et al.
Summary & contribution
ANKRD11 condensates restrain hypertranscribed regions and safeguard transcriptional control during development.
My contribution. I co-conceived the study, led computational and integrative analyses, and developed the hypertranscribed-gene framework.
Keywords- Hypertranscription
- Biomolecular condensates
- Developmental disorders
2025
Trends in Genetics · 41: 577–589First author · Cover article
Xiufeng Li, Nian Liu
Summary & contribution
A synthesis of LINE-1 regulation and its roles in genome organization, development and disease.
My contribution. I conceived and wrote the review, synthesized the literature, and developed its conceptual framework and figures.
Keywords- LINE-1 regulation
- Chromatin organization
- Development
2024
Nature Genetics · 56: 1494–1502Co-first author
Xiufeng Li*, Luyao Bie*, Yang Wang*, Yaqiang Hong*, et al.
Summary & contribution
Active LINE-1 elements promote long-range chromatin contacts and distal gene activation, including during zygotic genome activation.
My contribution. I led the computational and conceptual development, integrating genomic analyses into the mechanistic framework.
Keywords- LINE-1 regulation
- 3D genomics
- Zygotic genome activation
2024
Molecular Cell · 84: 1637–1650.e10Co-author
Yaqiang Hong*, Luyao Bie*, Tao Zhang*, et al., including Xiufeng Li
Summary & contribution
SAFB constrains chromatin contact-domain boundaries associated with L1 chimeric transcription.
My contribution. I contributed genomic analyses and interpretation of the genomic results.
Keywords- SAFB
- L1 chimeric transcription
- Contact-domain boundaries
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